In the sequence below, find the recognition sites for the following restriction enzymes: AvrII (CICTAGG), BamHI (G GATCC), BglII (A GATCT), BshNI (GIGYRCC), KpnI (GGTACIC), and TatI (WIGTACW), where the "" symbol in NINNNNN shows the cleavage position on one strand, Y means either pyrimidine, R means either purine, and W (weak) means either an AT or a TA basepair.
a) Box the sites, and label them with the first 2 letters of the enzyme name (use Ba for BamHI)
b) Which sites generate compatible (cohesive, sticky, complementary) overhangs that can be used to join fragments with DNA ligase?
AACGTTGGTACCTAGGAGATCTGGATCCTAGGAGTACTGGCGCCAACGIT TTGCAACCATGGATCCTCTAGACCTAGGATCCTCATGACCGCGGTTGCAA